Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015856829.1_cds_XP_016513257.1_25818
CDS Infomation

[gene=LOC107830264] [db_xref=GeneID:107830264] [protein=tetratricopeptide repeat protein 27 homolog] [partial=5',3'] [protein_id=XP_016513257.1] [location=complement(join(<7..55,790..881,1029..1098,1200..1258,1371..1455,2799..2876,2958..3056,3552..3643,3922..4011,4893..4951,5899..6217,6328..6409,7298..7629,8454..8613,10583..>10926))] [gbkey=CDS]
Sequence

CCCCTACCCACCCCTTATTTATCTCACCTCCACACCCTCATTGAACAAATTCTCGAATTA
ATCGAATCGGGTGAATACACAAAAGCACTCTCTTCCCCTGGCGCCAAATCCATTTTCTCC
TCACAATCTTTAATTCATAATCAGCTCAATGATTCTTCCCAAAAAGCTGAGTTGTTTTTC
TCAGAATTTGTGCCCCAATGTGTGACTTTGTTTCTAAATGCAGAAGATGGGGGTGAAAAA
AATTCTGTTTTTAATAGCTTTCTGAACAAGTTGTATAAAGCAGTTCTTGTCATGGCAGTT
TCTGTTGCAGCTCTGCTTGCTTTTAGTCAGTCTAACATTACTGGGCCAATGATGAAGTTG
CCACCAATGCCGTTAGGTGCAATAACTTTTGGAGAAGAAGAGTTGACCAGTGGTTCTGGT
GGTTGGTTAGAATGGGAAGCGTGGGCACAAAAGGAGTTAATGTCAGCTGGTTCTGACTTG
CGCGCCAAATTTTTGAATCTGCAGTATATAACCTTTGCCAAGATACTGCTTATGAGGACG
AAAGATATTTTGTCAGAAAGAAACGACTTGGGGATGGATGGAGCCAGAAGCATCTCATGG
TGGTTAGCTAGGCTGTTAATCATTCAACAGAAGTTGTTGGACGATCGCTCATCTTCTTTG
TTTGACTTATTGCAAGTATTAACGCGTGAAAGTTTGCAACATATTGGTTCTCTGGAGAAA
GTAAAAGATTATTGGGCTTCTCTGATATCAGAAGAGGATGTTTCGACTATTGTATCTATG
CTTCATTTGGAGGCAGGAATAATGGAACTTTACTATGGACGAGTTGATGCTTCAAGGGTC
CATATTGAATCAGCTGCAGCAACATCCAGACTTAATTTTTCGCTAAGTGGGGCTCTGGGC
TTCCGTACGGTACATCAGGTGGAACCAAAAGCACAACTCCTCCTTGTGGGTAGCGCGGAT
GCCGATGATGGTAGTGCTTCTCTTGGGAATGAGTTCCAAAATAAGGTTTCTACCAGTGTT
GAAAATGCTGTTCCTCAACATCCCAGTGAAACTCATGAAACATCAGACATATTGATGGCC
CCCAGATTCTTGGGAGATGATAAAAGTTCAGAATACAGTGCACAAGGTGCTCAAAATCAC
AGTATAGCGTCTATGCAGTTAAAGCCTACTCAGCAAGCAGTAATTTTAGCACAATGTCTT
TCTATTGAGAAGAGAGCTCGGGGTGATGAATTGCAAAGGTGGGAGATGGCTCCTTATATT
GAGGCAATTGATTCCCAGAAGTCATCACTTTTTACGCTACACCATTTGTGCAATATATTA
CGTATTCGATGGGAATCAACTCGTAGTCGTACGAAGCAGCGTGCATTACTGATGATGGAT
AAACTGGTTCAGGGAATATGTGATCCTTCCCCTGGAGCTACACAAAGGATGCATTGTTGT
TTTGGAGTTAATATCCCTACCATTCCTGCATTGCGCAAGGAGTATGGAGATCTACTAGTG
AGCTGTGGTTTGATAGGAGAAGCTGTTAAAGTGTATGAGGAGCTTGAGCTTTGGGATAAC
TTAATATACTGTTATAGGCTAATGGAGAAGAAAGCGGCAGCTGTTGAACTGATCAAGGCT
CAGTTATCCGAAAGACCATGTGACCCTAGGTTATGGTGTTCCCTTGGAGATGTTACAAAT
GATGACAAATGCTATGAGAAAGCCCAGGAAGTGTCAGGGAATAAGTCTGCTCGAGCACAG
CGCTCTCTTGCCCGTAGTGCTTACAACAGGGGGGAGTACGAGAAGTCAAAAGATCTATGG
GAATCTGCAATGGCAATGAATTCTATGTATCCAGATGGATGGTTTGCACTTGGTGCTGCT
GCTTTAAAGGCTAGAGATGTTGAGAAGGCACTGGATGGGTTTACACGTGCTGTTCAGCTT
GATCCTGAAAATGGAGAGGCTTGGAATAATATTGCTTGCCTGCATATGGTTAAGAAGAAA
AACAAGGAAGCTTTCATTGCATTTAAGGAA

Peptide Sequence

PEP ID

XP_016513257.1
PEP Infomation

PREDICTED: tetratricopeptide repeat protein 27 homolog, partial [Nicotiana tabacum]
Sequence

PLPTPYLSHLHTLIEQILELIESGEYTKALSSPGAKSIFSSQSLIHNQLNDSSQKAELFF
SEFVPQCVTLFLNAEDGGEKNSVFNSFLNKLYKAVLVMAVSVAALLAFSQSNITGPMMKL
PPMPLGAITFGEEELTSGSGGWLEWEAWAQKELMSAGSDLRAKFLNLQYITFAKILLMRT
KDILSERNDLGMDGARSISWWLARLLIIQQKLLDDRSSSLFDLLQVLTRESLQHIGSLEK
VKDYWASLISEEDVSTIVSMLHLEAGIMELYYGRVDASRVHIESAAATSRLNFSLSGALG
FRTVHQVEPKAQLLLVGSADADDGSASLGNEFQNKVSTSVENAVPQHPSETHETSDILMA
PRFLGDDKSSEYSAQGAQNHSIASMQLKPTQQAVILAQCLSIEKRARGDELQRWEMAPYI
EAIDSQKSSLFTLHHLCNILRIRWESTRSRTKQRALLMMDKLVQGICDPSPGATQRMHCC
FGVNIPTIPALRKEYGDLLVSCGLIGEAVKVYEELELWDNLIYCYRLMEKKAAAVELIKA
QLSERPCDPRLWCSLGDVTNDDKCYEKAQEVSGNKSARAQRSLARSAYNRGEYEKSKDLW
ESAMAMNSMYPDGWFALGAAALKARDVEKALDGFTRAVQLDPENGEAWNNIACLHMVKKK
NKEAFIAFKE

Transcript Sequence

Gene sequence data has not been registered.